pySBOL
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  • Introduction
  • Installation
  • Testing pySBOL
  • Getting Started with SBOL
  • Biological Parts Repositories
  • Computer-aided Design for Synthetic Biology
  • Design-Build-Test-Learn Workflows
  • API
pySBOL
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  • Welcome to pySBOL’s documentation!
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Welcome to pySBOL’s documentation!¶

pySBOL is a SWIG-Python wrapper around libSBOL, a module for reading, writing, and constructing genetic designs according to the standardized specifications of the Synthetic Biology Open Language (SBOL).

  • Introduction
  • Installation
    • Using Pip
    • Using Python
    • Using Installer for Windows
    • For Linux Users
  • Testing pySBOL
  • Getting Started with SBOL
    • Creating an SBOL Document
    • Creating SBOL Data Objects
    • Using Ontology Terms for Attribute Values
    • Adding and Getting Objects from a Document
    • Getting, Setting, and Editing Attributes
    • Creating, Adding and Getting Child Objects
    • Creating and Editing Reference Properties
    • Iterating and Indexing List Properties
    • Searching a Document
    • Copying Documents and Objects
    • Converting To and From Other Sequence Formats
    • Creating Biological Designs
  • Biological Parts Repositories
    • Re-using Genetic Parts From Online Repositories
    • Searching Part Repos
    • Submitting Designs to a Repo
  • Computer-aided Design for Synthetic Biology
    • Design Abstraction
    • Hierarchical DNA Assembly
    • Editing a Primary Structure
    • Sequence Assembly
    • Genome Integration
    • Full Example Code
  • Design-Build-Test-Learn Workflows
  • API

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2018, Bryan Bartley and Kiri Choi Revision 55f8d631.

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